Loading... # 系统设置 [如何在WSL2开启GUI（通过X11-forwarding） - 知乎 (zhihu.com)](https://zhuanlan.zhihu.com/p/613532987) # miniconda 从清华镜像中获取最新的地址：https:**/**/mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/ ```shell sudo apt update sudo apt install wget vim wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-py39_24.7.1-0-Linux-x86_64.sh bash Miniconda3-py39_24.7.1-0-Linux-x86_64.sh conda -V conda config --remove-key channels vim ~/.condarc ``` 添加以下内容： ```txt channels: - defaults show_channel_urls: true default_channels: - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/r custom_channels: conda-forge: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud msys2: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud bioconda: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud menpo: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud pytorch: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud simpleitk: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud ``` # R ## conda中R环境搭建 ```shell conda create -n mr conda activate mr conda install r-base=4.3.1 r-tidyverse r-coloc r-gmp r-meta r-lme4 r-nloptr pip install -U radian radian ``` ## 安装gwasglue ```r install.packages(c("BiocManager","devtools")) # 修改镜像地址 options()$repos options()$BioC_mirror options("repos" = c(CRAN="https://mirrors.ustc.edu.cn/CRAN/")) options(BioC_mirror="https://mirrors.westlake.edu.cn/bioconductor") devtools::install_github("jrs95/gassocplot") BiocManager::install(c("BiocGenerics","Biostrings","GenomeInfoDb","GenomicRanges","IRanges","Rsamtools","S4Vectors","SummarizedExperiment","VariantAnnotation","MendelianRandomization","TwoSampleMR")) # 创建github api key usethis::create_github_token() # 填写key # GITHUB_TOKEN="" gitcreds::gitcreds_set() BiocManager::install("MungeSumstats") devtools::install_github("mrcieu/gwasglue") ``` ``` ``` 最后修改：2024 年 11 月 03 日 © 允许规范转载 赞 如果觉得我的文章对你有用，请随意赞赏
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对国际规则的解读具有前瞻性。